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Bra002525 protein (Brassica rapa) - STRING interaction network
"Bra002525" - AT5G59845 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002525AT5G59845 (E=4e-034) | gibberellin-regulated family protein (92 aa)    
Predicted Functional Partners:
Bra001719
AT1G36240 (E=2e-059) | 60S ribosomal protein L30 (RPL30A) (112 aa)
           
  0.459
Bra029227
AT1G75750 (E=1e-035) GASA1 | GASA1 (GAST1 PROTEIN HOMOLOG 1) (99 aa)
           
  0.459
Bra022351.1-P
AT1G36240 (E=2e-059) | 60S ribosomal protein L30 (RPL30A) (112 aa)
           
  0.459
Bra001719.1-P
AT1G36240 (E=2e-059) | 60S ribosomal protein L30 (RPL30A) (112 aa)
           
  0.459
Bra036418
AT3G03980 (E=3e-102) | short-chain dehydrogenase/reductase (SDR) family protein (237 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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