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Bra002527 protein (Brassica rapa) - STRING interaction network
"Bra002527" - AT5G59840 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002527AT5G59840 (E=5e-097) | Ras-related GTP-binding family protein (216 aa)    
Predicted Functional Partners:
Bra034106
AT4G17530 (E=2e-017) RAB1C, ATRAB1C, ATRABD2C | ATRAB1C; GTP binding (147 aa)
     
 
  0.949
Bra014592
AT4G17530 (E=2e-017) RAB1C, ATRAB1C, ATRABD2C | ATRAB1C; GTP binding (140 aa)
     
 
  0.949
Bra004941
AT4G17530 (E=2e-015) RAB1C, ATRAB1C, ATRABD2C | ATRAB1C; GTP binding (277 aa)
     
 
  0.949
Bra028630
AT5G09550 (E=3e-248) | RAB GDP-dissociation inhibitor (613 aa)
       
 
  0.937
Bra014523
AT3G59920 (E=1e-250) ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (444 aa)
       
 
  0.937
Bra009390
AT5G09550 (E=2e-249) | RAB GDP-dissociation inhibitor (445 aa)
       
 
  0.937
Bra007493
AT3G59920 (E=1e-239) ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (445 aa)
       
 
  0.937
Bra007490
AT3G59920 (E=5e-064) ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (406 aa)
       
 
  0.937
Bra006026
AT5G09550 (E=5e-234) | RAB GDP-dissociation inhibitor (439 aa)
       
 
  0.937
Bra004805
AT2G44100 (E=2e-252) ATGDI1, AT-GDI1 | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1); RAB GDP-dissociation inhibitor (444 aa)
       
 
  0.937
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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