STRINGSTRING
Bra002530 protein (Brassica rapa) - STRING interaction network
"Bra002530" - AT5G59800 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002530AT5G59800 (E=2e-097) MBD7, ATMBD7 | MBD7 (METHYL-CPG-BINDING DOMAIN 7); DNA binding / DNA demethylase/ methyl-CpG binding (307 aa)    
Predicted Functional Partners:
Bra021326
AT1G54840 (E=2e-115) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 10 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Heat shock protein Hsp20 (InterPro-IPR002068), HSP20-like chaperone (InterPro-IPR008978); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G54850.1); Has 44 Blast hits to 42 proteins in 10 species- Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (336 aa)
       
 
  0.954
Bra024143
AT4G29510 (E=1e-184) ATPRMT11, PRMT11, ATPRMT1B, PRMT1B | PRMT11 (ARGININE METHYLTRANSFERASE 11); protein-arginine N-methyltransferase (389 aa)
       
 
  0.712
Bra011118
AT4G29510 (E=3e-203) ATPRMT11, PRMT11, ATPRMT1B, PRMT1B | PRMT11 (ARGININE METHYLTRANSFERASE 11); protein-arginine N-methyltransferase (390 aa)
       
 
  0.712
Bra012253
AT1G20870 (E=2e-170) | LOCATED IN- cellular_component unknown; EXPRESSED IN- 15 plant structures; EXPRESSED DURING- 7 growth stages; CONTAINS InterPro DOMAIN/s- HSP20-like chaperone (InterPro-IPR008978); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G54850.1); Has 48 Blast hits to 39 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (460 aa)
     
 
  0.683
Bra027290
AT3G14980 (E=0.0) | PHD finger transcription factor, putative (1114 aa)
       
 
  0.668
Bra025851
AT1G20870 (E=1e-079) | LOCATED IN- cellular_component unknown; EXPRESSED IN- 15 plant structures; EXPRESSED DURING- 7 growth stages; CONTAINS InterPro DOMAIN/s- HSP20-like chaperone (InterPro-IPR008978); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G54850.1); Has 48 Blast hits to 39 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (255 aa)
     
 
  0.608
Bra033814
AT3G46580 (E=2e-060) MBD05, MBD5, ATMBD5 | MBD5 (METHYL-CPG-BINDING DOMAIN PROTEIN 5); DNA binding / methyl-CpG binding (206 aa)
           
  0.607
Bra020318
AT5G59380 (E=3e-068) MBD6, ATMBD6 | MBD6; DNA binding / DNA demethylase/ methyl-CpG binding (229 aa)
           
  0.606
Bra002633
AT5G58610 (E=7e-093) | PHD finger transcription factor, putative (422 aa)
       
 
  0.592
Bra038936
AT5G35330 (E=2e-090) MBD02, MBD2, ATMBD2 | MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02); DNA binding / DNA demethylase (258 aa)
           
  0.574
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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