STRINGSTRING
Bra002566 protein (Brassica rapa) - STRING interaction network
"Bra002566" - AT5G59430 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002566AT5G59430 (E=2e-215) ATTRP1 | TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding (569 aa)    
Predicted Functional Partners:
Bra026012
AT1G16970 (E=1e-299) KU70, ATKU70 | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG); double-stranded DNA binding / protein binding (577 aa)
       
 
  0.765
Bra029978
AT3G49850 (E=2e-070) TRB3, ATTRB3, TBP2 | TRB3 (TELOMERE REPEAT BINDING FACTOR 3); DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor (222 aa)
           
  0.549
Bra018818
AT1G49950 (E=2e-111) TRB1, ATTRB1 | DNA-binding protein, putative (351 aa)
           
  0.529
Bra039650
AT1G49950 (E=1e-104) TRB1, ATTRB1 | DNA-binding protein, putative (310 aa)
           
  0.499
Bra036200
AT5G38880 (E=2e-243) | unknown protein (722 aa)
           
  0.478
Bra025412
AT5G38880 (E=0.0) | unknown protein (779 aa)
           
  0.478
Bra008588
AT5G16850 (E=0.0) ATTERT | ATTERT (TELOMERASE REVERSE TRANSCRIPTASE); telomerase/ telomeric template RNA reverse transcriptase (1165 aa)
           
  0.408
Bra027513
AT2G05210 (E=2e-090) AtPOT1a | AtPOT1a (Protection of Telomeres 1a); telomeric DNA binding (410 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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