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Bra002567 protein (Brassica rapa) - STRING interaction network
"Bra002567" - AT5G47590 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002567AT5G47590 (E=1e-062) | heat shock protein-related (381 aa)    
Predicted Functional Partners:
Bra000374
AT2G45150 (E=4e-161) | phosphatidate cytidylyltransferase family protein (632 aa)
     
  0.901
Bra040323
AT2G45140 (E=4e-108) PVA12 | PVA12 (PLANT VAP HOMOLOG 12); structural molecule (239 aa)
       
  0.892
Bra035442
AT3G60600 (E=5e-017) VAP27-1 | VAP (VESICLE ASSOCIATED PROTEIN); protein binding (108 aa)
       
  0.892
Bra031641
AT1G08820 (E=2e-092) VAP27-2 | VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2); structural molecule (343 aa)
       
  0.892
Bra030744
AT1G08820 (E=6e-151) VAP27-2 | VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2); structural molecule (393 aa)
       
  0.892
Bra029550
AT4G05060 (E=1e-115) | vesicle-associated membrane family protein / VAMP family protein (281 aa)
       
  0.892
Bra024958
AT5G47180 (E=3e-090) | vesicle-associated membrane family protein / VAMP family protein (218 aa)
       
  0.892
Bra022697
AT5G54110 (E=3e-112) ATMAMI | ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED); structural molecule (264 aa)
       
  0.892
Bra022111
AT5G47180 (E=6e-100) | vesicle-associated membrane family protein / VAMP family protein (220 aa)
       
  0.892
Bra022110
AT5G47180 (E=6e-101) | vesicle-associated membrane family protein / VAMP family protein (218 aa)
       
  0.892
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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