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Bra002570 protein (Brassica rapa) - STRING interaction network
"Bra002570" - AT5G59390 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002570AT5G59390 (E=1e-200) | XH/XS domain-containing protein (541 aa)    
Predicted Functional Partners:
Bra006276
AT5G15020 (E=0.0) SNL2 | SNL2 (SIN3-LIKE 2) (1346 aa)
           
  0.542
Bra015833
AT1G75560 (E=2e-097) | zinc knuckle (CCHC-type) family protein (246 aa)
           
  0.518
Bra033593
AT1G75560 (E=1e-080) | zinc knuckle (CCHC-type) family protein (252 aa)
           
  0.493
Bra019255
AT4G23980 (E=2e-290) ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (623 aa)
           
  0.406
Bra013748
AT4G23980 (E=7e-182) ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (602 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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