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Bra002576 protein (Brassica rapa) - STRING interaction network
"Bra002576" - AT5G59340 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002576AT5G59340 (E=1e-040) WOX2 | WOX2 (WUSCHEL RELATED HOMEOBOX 2); transcription factor (210 aa)    
Predicted Functional Partners:
Bra022960
AT2G33880 (E=2e-150) WOX9, HB-3, STIP | HB-3; transcription factor (393 aa)
           
  0.541
Bra023738
AT3G23290 (E=4e-072) LSH4 | LSH4 (LIGHT SENSITIVE HYPOCOTYLS 4) (176 aa)
           
  0.430
Bra021707
AT2G31160 (E=7e-083) LSH3 | LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3) (217 aa)
           
  0.430
Bra018263
AT2G31160 (E=4e-078) LSH3 | LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3) (215 aa)
           
  0.430
Bra007415
AT3G58730 (E=7e-136) | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (261 aa)
           
  0.426
Bra003352
AT3G58730 (E=9e-136) | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (261 aa)
           
  0.426
Bra036446
AT3G03660 (E=7e-091) WOX11 | WOX11 (WUSCHEL related homeobox 11); DNA binding / transcription factor (265 aa)
           
  0.416
Bra031980
AT3G03660 (E=8e-103) WOX11 | WOX11 (WUSCHEL related homeobox 11); DNA binding / transcription factor (322 aa)
           
  0.416
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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