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Bra002616 protein (Brassica rapa) - STRING interaction network
"Bra002616" - AT5G58870 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002616AT5G58870 (E=0.0) ftsh9 | ftsh9 (FtsH protease 9); ATP-dependent peptidase/ ATPase/ metallopeptidase (779 aa)    
Predicted Functional Partners:
Bra032539
AT1G03860 (E=6e-152) ATPHB2 | ATPHB2 (PROHIBITIN 2) (288 aa)
     
 
  0.787
Bra030546
AT1G03860 (E=2e-152) ATPHB2 | ATPHB2 (PROHIBITIN 2) (288 aa)
     
 
  0.787
Bra015273
AT1G03860 (E=7e-149) ATPHB2 | ATPHB2 (PROHIBITIN 2) (288 aa)
     
 
  0.787
Bra011035
AT4G28510 (E=2e-134) ATPHB1 | ATPHB1 (PROHIBITIN 1) (290 aa)
     
 
  0.787
Bra010364
AT4G28510 (E=3e-119) ATPHB1 | ATPHB1 (PROHIBITIN 1) (242 aa)
     
 
  0.787
Bra029092
AT5G53170 (E=1e-013) FTSH11 | FTSH11 (FtsH protease 11); ATP-dependent peptidase/ ATPase/ metallopeptidase (154 aa)
     
 
  0.774
Bra007382
AT3G58140 (E=2e-226) | phenylalanyl-tRNA synthetase class IIc family protein (430 aa)
   
 
  0.769
Bra003322
AT3G58140 (E=4e-232) | phenylalanyl-tRNA synthetase class IIc family protein (426 aa)
   
 
  0.769
Bra041120
ATCG00120 (E=1e-229) ATPA | Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast. ; Produces ATP from ADP in the presence of a proton gradient across the membrane (504 aa)
     
 
  0.735
Bra040490
AT2G07698 (E=1e-039) | ATP synthase alpha chain, mitochondrial, putative (99 aa)
     
 
  0.735
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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