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Bra002619 protein (Brassica rapa) - STRING interaction network
"Bra002619" - AT5G58770 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002619AT5G58770 (E=1e-129) | dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative (305 aa)    
Predicted Functional Partners:
Bra025593
AT5G40280 (E=2e-201) ERA1, ATFTB, WIG | ERA1 (ENHANCED RESPONSE TO ABA 1); farnesyltranstransferase/ protein farnesyltransferase (445 aa)
     
 
  0.942
Bra022156
AT5G47770 (E=6e-190) FPS1 | FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase (342 aa)
     
  0.942
Bra028096
AT2G18620 (E=2e-155) | geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (359 aa)
   
  0.936
Bra011898
AT4G38460 (E=2e-138) GGR | GGR (geranylgeranyl reductase); farnesyltranstransferase (322 aa)
   
  0.936
Bra011709
AT4G36810 (E=1e-164) GGPS1 | GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase (363 aa)
   
  0.936
Bra034641
AT4G34640 (E=1e-156) SQS1, ERG9 | SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase (441 aa)
     
 
  0.924
Bra023603
AT5G17230 (E=5e-191) PSY | phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase (416 aa)
     
 
  0.924
Bra011549
AT4G34650 (E=9e-194) SQS2 | SQS2 (SQUALENE SYNTHASE 2); farnesyl-diphosphate farnesyltransferase (418 aa)
     
 
  0.924
Bra011548
AT4G34640 (E=4e-159) SQS1, ERG9 | SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase (398 aa)
     
 
  0.924
Bra008569
AT5G17230 (E=4e-202) PSY | phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase (425 aa)
     
 
  0.924
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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