STRINGSTRING
Bra002620 protein (Brassica rapa) - STRING interaction network
"Bra002620" - AT5G58750 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002620AT5G58750 (E=1e-201) | wound-responsive protein-related (386 aa)    
Predicted Functional Partners:
Bra012646
AT4G17720 (E=8e-135) | RNA recognition motif (RRM)-containing protein (312 aa)
       
 
  0.955
Bra001418
AT3G11730 (E=3e-106) ATFP8, ATRABD1, RABD1 | ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding (206 aa)
       
 
  0.952
Bra038676
AT3G11730 (E=7e-109) ATFP8, ATRABD1, RABD1 | ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding (206 aa)
       
 
  0.949
Bra040177
AT4G17720 (E=1e-125) | RNA recognition motif (RRM)-containing protein (302 aa)
       
 
  0.948
Bra023585
AT5G16840 (E=3e-111) BPA1 | BPA1 (BINDINGPARTNEROFACD11 1); nucleic acid binding / nucleotide binding / oxidoreductase (253 aa)
       
 
  0.948
Bra006373
AT5G16840 (E=8e-111) BPA1 | BPA1 (BINDINGPARTNEROFACD11 1); nucleic acid binding / nucleotide binding / oxidoreductase (261 aa)
       
 
  0.948
Bra026423
AT4G26550 (E=2e-108) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- SFT2-like (InterPro-IPR011691); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G56020.1); Has 452 Blast hits to 452 proteins in 136 species- Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 89; Plants - 61; Viruses - 0; Other Eukaryotes - 104 (source- NCBI BLink). (226 aa)
       
      0.907
Bra000056
AT2G38360 (E=1e-089) PRA1.B4 | PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4) (222 aa)
       
      0.905
Bra005924
AT5G07110 (E=1e-068) PRA1.B6 | PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6) (218 aa)
       
      0.904
Bra004965
AT2G40380 (E=3e-069) PRA1.B2 | PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2) (213 aa)
       
      0.904
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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