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Bra002623 protein (Brassica rapa) - STRING interaction network
"Bra002623" - AT5G58710 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002623AT5G58710 (E=2e-101) ROC7 | ROC7; peptidyl-prolyl cis-trans isomerase ; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (196 aa)    
Predicted Functional Partners:
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.991
Bra038786
AT4G21110 (E=2e-085) | G10 family protein (145 aa)
     
  0.934
Bra020886
AT4G21110 (E=1e-085) | G10 family protein (145 aa)
     
  0.934
Bra013502
AT4G21110 (E=3e-084) | G10 family protein (145 aa)
     
  0.934
Bra001208
AT3G66652 (E=1e-128) | fip1 motif-containing protein (1267 aa)
     
 
0.932
Bra005981
AT2G27040 (E=4e-044) AGO4, OCP11 | AGO4 (ARGONAUTE 4); nucleic acid binding (741 aa)
     
 
    0.921
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
     
 
    0.920
Bra004185
AT1G66730 (E=9e-181) | ATP dependent DNA ligase family protein (1082 aa)
         
  0.867
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
     
  0.852
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
     
  0.852
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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