STRINGSTRING
Bra002629 protein (Brassica rapa) - STRING interaction network
"Bra002629" - AT5G58650 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002629AT5G58650 (E=3e-011) PSY1 | PSY1 (plant peptide containing sulfated tyrosine 1) (73 aa)    
Predicted Functional Partners:
Bra018664
AT1G08030 (E=1e-158) | unknown protein (498 aa)
       
 
  0.943
Bra030710
AT1G08030 (E=3e-154) | unknown protein (496 aa)
       
 
  0.807
Bra007970
AT1G71696 (E=9e-249) SOL1 | SOL1 (SUPPRESSOR OF LLP1 1); carboxypeptidase/ metallocarboxypeptidase/ zinc ion binding (489 aa)
           
  0.455
Bra020739
AT3G30350 (E=6e-043) | unknown protein (177 aa)
           
  0.408
Bra000615
AT5G50260 (E=4e-183) | cysteine proteinase, putative (361 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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