STRINGSTRING
Bra002633 protein (Brassica rapa) - STRING interaction network
"Bra002633" - AT5G58610 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002633AT5G58610 (E=7e-093) | PHD finger transcription factor, putative (422 aa)    
Predicted Functional Partners:
Bra021326
AT1G54840 (E=2e-115) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 10 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Heat shock protein Hsp20 (InterPro-IPR002068), HSP20-like chaperone (InterPro-IPR008978); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G54850.1); Has 44 Blast hits to 42 proteins in 10 species- Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (336 aa)
       
 
  0.830
Bra025851
AT1G20870 (E=1e-079) | LOCATED IN- cellular_component unknown; EXPRESSED IN- 15 plant structures; EXPRESSED DURING- 7 growth stages; CONTAINS InterPro DOMAIN/s- HSP20-like chaperone (InterPro-IPR008978); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G54850.1); Has 48 Blast hits to 39 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (255 aa)
       
 
  0.756
Bra012253
AT1G20870 (E=2e-170) | LOCATED IN- cellular_component unknown; EXPRESSED IN- 15 plant structures; EXPRESSED DURING- 7 growth stages; CONTAINS InterPro DOMAIN/s- HSP20-like chaperone (InterPro-IPR008978); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G54850.1); Has 48 Blast hits to 39 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (460 aa)
       
 
  0.756
Bra006693
AT5G59800 (E=6e-060) MBD7, ATMBD7 | MBD7 (METHYL-CPG-BINDING DOMAIN 7); DNA binding / DNA demethylase/ methyl-CpG binding (282 aa)
       
 
  0.592
Bra002530
AT5G59800 (E=2e-097) MBD7, ATMBD7 | MBD7 (METHYL-CPG-BINDING DOMAIN 7); DNA binding / DNA demethylase/ methyl-CpG binding (307 aa)
       
 
  0.592
Bra009442
AT5G04560 (E=6e-263) DME | DME (DEMETER); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase (1926 aa)
       
 
  0.508
Bra005264
AT2G36490 (E=1e-260) DML1, ROS1 | DML1 (DEMETER-LIKE 1); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase/ protein binding (1400 aa)
       
 
  0.508
Bra002670
AT5G58130 (E=2e-122) | RNA recognition motif (RRM)-containing protein (680 aa)
           
  0.445
Bra029401
AT5G24330 (E=3e-168) ATXR6, SDG34 | ATXR6; DNA binding / protein binding (550 aa)
           
  0.426
Bra009752
AT5G24330 (E=2e-166) ATXR6, SDG34 | ATXR6; DNA binding / protein binding (345 aa)
           
  0.426
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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