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Bra002634 protein (Brassica rapa) - STRING interaction network
"Bra002634" - AT5G58600 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002634AT5G58600 (E=4e-190) PMR5 | PMR5 (POWDERY MILDEW RESISTANT 5) (399 aa)    
Predicted Functional Partners:
Bra003200
AT3G54920 (E=2e-184) PMR6 | PMR6 (powdery mildew resistant 6); lyase/ pectate lyase (491 aa)
           
  0.587
Bra040809
AT4G13710 (E=8e-219) | pectate lyase family protein (423 aa)
           
  0.454
Bra032730
AT4G13710 (E=8e-230) | pectate lyase family protein (451 aa)
           
  0.454
Bra028549
AT3G53190 (E=7e-256) | pectate lyase family protein (490 aa)
           
  0.454
Bra015070
AT3G24670 (E=1e-235) | pectate lyase family protein (492 aa)
           
  0.454
Bra007116
AT5G04310 (E=6e-152) | pectate lyase family protein (490 aa)
           
  0.454
Bra006976
AT3G53190 (E=7e-231) | pectate lyase family protein (457 aa)
           
  0.454
Bra005799
AT5G04310 (E=6e-237) | pectate lyase family protein (512 aa)
           
  0.454
Bra034218
AT4G03550 (E=0.0) ATGSL05, GSL05, ATGSL5, PMR4, GSL5 | ATGSL05 (GLUCAN SYNTHASE-LIKE 5); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (1782 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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