STRINGSTRING
Bra002638 protein (Brassica rapa) - STRING interaction network
"Bra002638" - AT5G58550 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002638AT5G58550 (E=0.0) EOL2 | EOL2 (ETO1-LIKE 2); binding / protein binding (922 aa)    
Predicted Functional Partners:
Bra031846
AT5G65800 (E=1e-271) ACS5, CIN5, ETO2, ATACS5 | ACS5 (ACC SYNTHASE 5); 1-aminocyclopropane-1-carboxylate synthase (470 aa)
       
 
  0.797
Bra030199
AT2G22810 (E=6e-229) ACS4, ACC4, ATACS4 | ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4); 1-aminocyclopropane-1-carboxylate synthase (474 aa)
       
 
  0.753
Bra025031
AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (760 aa)
       
      0.610
Bra022023
AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (785 aa)
       
      0.610
Bra017569
AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (786 aa)
       
      0.610
Bra017962
AT3G49700 (E=2e-260) ETO3, ACS9 | ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9); 1-aminocyclopropane-1-carboxylate synthase (470 aa)
       
 
  0.571
Bra012924
AT3G49700 (E=5e-264) ETO3, ACS9 | ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9); 1-aminocyclopropane-1-carboxylate synthase (470 aa)
       
 
  0.571
Bra026456
AT4G26200 (E=3e-241) ACS7, ATACS7 | ACS7; 1-aminocyclopropane-1-carboxylate synthase (448 aa)
       
 
  0.453
Bra019117
AT4G26200 (E=5e-233) ACS7, ATACS7 | ACS7; 1-aminocyclopropane-1-carboxylate synthase (451 aa)
       
 
  0.435
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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