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Bra002649 protein (Brassica rapa) - STRING interaction network
"Bra002649" - AT5G37055 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002649AT5G37055 (E=2e-079) ATSWC6, SEF | SEF (SERRATED LEAVES AND EARLY FLOWERING) (171 aa)    
Predicted Functional Partners:
Bra020185
AT5G22330 (E=2e-239) ATTIP49A, RIN1 | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1); protein binding (458 aa)
       
 
  0.932
Bra006621
AT5G22330 (E=2e-240) ATTIP49A, RIN1 | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1); protein binding (458 aa)
       
 
  0.932
Bra002406
AT5G22330 (E=2e-253) ATTIP49A, RIN1 | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1); protein binding (458 aa)
       
 
  0.932
Bra037834
AT5G67630 (E=8e-034) | DNA helicase, putative (93 aa)
       
 
  0.903
Bra024433
AT5G67630 (E=8e-236) | DNA helicase, putative (466 aa)
       
 
  0.903
Bra030818
AT3G33520 (E=1e-099) ATARP6, ARP6, SUF3, ESD1 | ATARP6; structural constituent of cytoskeleton (222 aa)
       
 
  0.834
Bra034727
AT3G12810 (E=0.0) PIE1, SRCAP, chr13 | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase/ nucleic acid binding (2019 aa)
       
 
  0.833
Bra018984
AT1G52740 (E=1e-068) HTA9 | HTA9 (HISTONE H2A PROTEIN 9); DNA binding (135 aa)
     
 
  0.783
Bra018984.1-P
AT1G52740 (E=1e-068) HTA9 | HTA9 (HISTONE H2A PROTEIN 9); DNA binding (135 aa)
     
 
  0.783
Bra014808
AT3G54560 (E=2e-062) HTA11 | HTA11; DNA binding (136 aa)
     
 
  0.781
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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