STRINGSTRING
Bra002650 protein (Brassica rapa) - STRING interaction network
"Bra002650" - AT5G58450 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002650AT5G58450 (E=0.0) | binding (999 aa)    
Predicted Functional Partners:
Bra033377
AT1G03150 (E=1e-098) | GCN5-related N-acetyltransferase (GNAT) family protein (283 aa)
       
 
  0.980
Bra030521
AT1G03150 (E=2e-063) | GCN5-related N-acetyltransferase (GNAT) family protein (117 aa)
       
 
  0.977
Bra032548
AT1G03650 (E=2e-077) | GCN5-related N-acetyltransferase (GNAT) family protein (158 aa)
       
 
  0.949
Bra005135
AT2G38130 (E=7e-096) ATMAK3 | ATMAK3; N-acetyltransferase (185 aa)
       
 
  0.949
Bra024732
AT1G25682 (E=3e-136) | cell cycle control protein-related (314 aa)
       
      0.929
Bra011006
AT1G25682 (E=1e-132) | cell cycle control protein-related (314 aa)
       
      0.929
Bra023321
AT5G11340 (E=1e-077) | GCN5-related N-acetyltransferase (GNAT) family protein (159 aa)
     
 
  0.916
Bra008969
AT5G11340 (E=8e-084) | GCN5-related N-acetyltransferase (GNAT) family protein (164 aa)
     
 
  0.916
Bra023435
AT5G13780 (E=3e-089) | GCN5-related N-acetyltransferase, putative (194 aa)
       
 
  0.914
Bra008803
AT5G13780 (E=1e-082) | GCN5-related N-acetyltransferase, putative (167 aa)
       
 
  0.914
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (16%) [HD]