STRINGSTRING
Bra002653 protein (Brassica rapa) - STRING interaction network
"Bra002653" - AT4G13235 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002653AT4G13235 (E=3e-028) EDA21 | EDA21 (embryo sac development arrest 21) (94 aa)    
Predicted Functional Partners:
Bra003539
AT1G79940 (E=0.0) ATERDJ2A | ATERDJ2A; heat shock protein binding / unfolded protein binding (686 aa)
           
  0.489
Bra013510
AT4G21180 (E=2e-306) ATERDJ2B | ATERDJ2B; heat shock protein binding / unfolded protein binding (663 aa)
           
  0.475
Bra008501
AT1G79940 (E=3e-025) ATERDJ2A | ATERDJ2A; heat shock protein binding / unfolded protein binding (357 aa)
           
  0.475
Bra034763
AT3G12290 (E=6e-151) | tetrahydrofolate dehydrogenase/cyclohydrolase, putative (298 aa)
           
  0.406
Bra001447
AT3G12290 (E=7e-154) | tetrahydrofolate dehydrogenase/cyclohydrolase, putative (300 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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