STRINGSTRING
Bra002661 protein (Brassica rapa) - STRING interaction network
"Bra002661" - AT5G58320 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002661AT5G58320 (E=3e-207) | kinase interacting protein-related (553 aa)    
Predicted Functional Partners:
Bra002659
AT5G58340 (E=6e-160) | DNA binding (433 aa)
           
  0.479
Bra018724
AT1G48405 (E=6e-099) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; CONTAINS InterPro DOMAIN/s- KIP1-like (InterPro-IPR011684); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G17680.1); Has 119 Blast hits to 117 proteins in 34 species- Archae - 0; Bacteria - 22; Metazoa - 7; Fungi - 8; Plants - 57; Viruses - 0; Other Eukaryotes - 25 (source- NCBI BLink). (274 aa)
           
  0.406
Bra014135
AT1G48405 (E=2e-099) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; CONTAINS InterPro DOMAIN/s- KIP1-like (InterPro-IPR011684); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G17680.1); Has 119 Blast hits to 117 proteins in 34 species- Archae - 0; Bacteria - 22; Metazoa - 7; Fungi - 8; Plants - 57; Viruses - 0; Other Eukaryotes - 25 (source- NCBI BLink). (295 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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