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Bra002662 protein (Brassica rapa) - STRING interaction network
"Bra002662" - AT5G58290 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002662AT5G58290 (E=5e-223) RPT3 | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3); ATPase (404 aa)    
Predicted Functional Partners:
Bra035996
AT5G43010 (E=5e-043) RPT4A | RPT4A; ATPase (215 aa)
     
  0.999
Bra017055
AT2G39730 (E=2e-239) RCA | RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator (443 aa)
     
  0.999
Bra016017
AT1G73110 (E=7e-201) | ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative (421 aa)
     
  0.999
Bra005019
AT2G39730 (E=2e-259) RCA | RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator (475 aa)
     
  0.999
Bra000144
AT2G39730 (E=1e-261) RCA | RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator (475 aa)
     
  0.999
Bra040569
AT1G53750 (E=3e-238) RPT1A | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase (433 aa)
   
0.998
Bra039688
AT1G53750 (E=5e-247) RPT1A | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase (426 aa)
   
0.998
Bra030922
AT1G53750 (E=3e-243) RPT1A | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase (426 aa)
   
0.998
Bra008198
AT1G45000 (E=4e-130) | 26S proteasome regulatory complex subunit p42D, putative (628 aa)
   
0.998
Bra033655
AT5G43010 (E=8e-207) RPT4A | RPT4A; ATPase (399 aa)
   
0.998
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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