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Bra002665 protein (Brassica rapa) - STRING interaction network
"Bra002665" - AT5G58250 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002665AT5G58250 (E=1e-086) | unknown protein (212 aa)    
Predicted Functional Partners:
Bra036622
AT5G27560 (E=1e-156) | unknown protein (336 aa)
   
        0.574
Bra039488
AT5G36120 (E=2e-067) CCB3 | CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) (180 aa)
   
        0.559
Bra004323
AT1G68590 (E=1e-067) | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (168 aa)
   
        0.545
Bra007055
AT3G54210 (E=1e-078) | ribosomal protein L17 family protein (208 aa)
     
        0.544
Bra003176
AT3G54210 (E=2e-093) | ribosomal protein L17 family protein (208 aa)
     
        0.544
Bra004027
AT1G68590 (E=3e-066) | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (160 aa)
   
        0.539
Bra008678
AT5G15760 (E=6e-074) | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (179 aa)
   
        0.537
Bra035054
AT1G78630 (E=3e-131) emb1473 | emb1473 (embryo defective 1473); structural constituent of ribosome (240 aa)
     
        0.535
Bra008373
AT1G78630 (E=3e-122) emb1473 | emb1473 (embryo defective 1473); structural constituent of ribosome (242 aa)
     
        0.535
Bra038239
AT3G19900 (E=7e-097) | unknown protein (220 aa)
   
          0.526
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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