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Bra002670 protein (Brassica rapa) - STRING interaction network
"Bra002670" - AT5G58130 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002670AT5G58130 (E=2e-122) | RNA recognition motif (RRM)-containing protein (680 aa)    
Predicted Functional Partners:
Bra005264
AT2G36490 (E=1e-260) DML1, ROS1 | DML1 (DEMETER-LIKE 1); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase/ protein binding (1400 aa)
           
  0.526
Bra009442
AT5G04560 (E=6e-263) DME | DME (DEMETER); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase (1926 aa)
           
  0.478
Bra027290
AT3G14980 (E=0.0) | PHD finger transcription factor, putative (1114 aa)
           
  0.475
Bra004441
AT2G47620 (E=8e-155) ATSWI3A, CHB1 | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A); DNA binding (514 aa)
     
   
  0.447
Bra002633
AT5G58610 (E=7e-093) | PHD finger transcription factor, putative (422 aa)
           
  0.445
Bra037773
AT5G64330 (E=0.0) NPH3, RPT3, JK218 | NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3); protein binding / signal transducer (737 aa)
           
  0.426
Bra024285
AT5G64330 (E=0.0) NPH3, RPT3, JK218 | NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3); protein binding / signal transducer (725 aa)
           
  0.426
Bra012838
AT3G51770 (E=0.0) ETO1 | ETO1 (ETHYLENE OVERPRODUCER 1); protein binding, bridging (922 aa)
           
  0.426
Bra008851
AT5G13160 (E=1e-254) PBS1 | PBS1 (avrPphB susceptible 1); kinase/ protein serine/threonine kinase (455 aa)
           
  0.426
Bra006875
AT3G51770 (E=0.0) ETO1 | ETO1 (ETHYLENE OVERPRODUCER 1); protein binding, bridging (941 aa)
           
  0.426
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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