STRINGSTRING
Bra002673 protein (Brassica rapa) - STRING interaction network
"Bra002673" - AT5G58090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002673AT5G58090 (E=9e-251) | glycosyl hydrolase family 17 protein (480 aa)    
Predicted Functional Partners:
Bra003333
AT1G56145 (E=0.0) | leucine-rich repeat family protein / protein kinase family protein (1004 aa)
           
  0.476
Bra039126
AT3G01340 (E=4e-173) | protein transport protein SEC13 family protein / WD-40 repeat family protein (302 aa)
           
  0.455
Bra022774
AT2G30050 (E=2e-176) | transducin family protein / WD-40 repeat family protein (301 aa)
           
  0.455
Bra021603
AT2G30050 (E=7e-170) | transducin family protein / WD-40 repeat family protein (692 aa)
           
  0.455
Bra018343
AT2G30050 (E=1e-167) | transducin family protein / WD-40 repeat family protein (365 aa)
           
  0.455
Bra027240
AT3G15480 (E=2e-075) | unknown protein (175 aa)
           
  0.449
Bra027757
AT1G64090 (E=2e-096) | reticulon family protein (RTNLB3) (250 aa)
           
  0.406
Bra027678
AT1G64090 (E=6e-103) | reticulon family protein (RTNLB3) (251 aa)
           
  0.406
Bra024865
AT2G01660 (E=3e-119) PDLP6 | PDLP6 (PLASMODESMATA-LOCATED PROTEIN 6) (260 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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