STRINGSTRING
Bra002675 protein (Brassica rapa) - STRING interaction network
"Bra002675" - AT5G58060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002675AT5G58060 (E=8e-107) YKT61, ATYKT61, ATGP1 | YKT61 (199 aa)    
Predicted Functional Partners:
Bra026741
AT1G15880 (E=7e-116) GOS11, atgos11 | GOS11 (golgi snare 11); SNARE binding ; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor (224 aa)
     
  0.995
Bra026095
AT1G15880 (E=1e-113) GOS11, atgos11 | GOS11 (golgi snare 11); SNARE binding ; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor (225 aa)
     
  0.995
Bra000379
AT2G45200 (E=8e-115) GOS12, ATGOS12 | GOS12 (GOLGI SNARE 12); SNARE binding ; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor (234 aa)
     
  0.995
Bra028370
AT3G24350 (E=5e-101) SYP32, ATSYP32 | SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor (297 aa)
     
  0.994
Bra015036
AT3G24350 (E=6e-129) SYP32, ATSYP32 | SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor (344 aa)
     
  0.994
Bra001945
AT3G24350 (E=4e-108) SYP32, ATSYP32 | SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor (367 aa)
     
  0.994
Bra026727
AT1G16240 (E=1e-113) SYP51, ATSYP51 | SYP51 (SYNTAXIN OF PLANTS 51); SNAP receptor (233 aa)
     
  0.994
Bra026074
AT1G16240 (E=1e-103) SYP51, ATSYP51 | SYP51 (SYNTAXIN OF PLANTS 51); SNAP receptor (232 aa)
     
  0.994
Bra008425
AT1G79590 (E=3e-119) SYP52, ATSYP52 | SYP52 (SYNTAXIN OF PLANTS 52); SNAP receptor (234 aa)
     
  0.994
Bra040987
AT5G39510 (E=2e-094) VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A | SGR4 (SHOOT GRAVITROPSIM 4); receptor (221 aa)
     
  0.994
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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