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Bra002678 protein (Brassica rapa) - STRING interaction network
"Bra002678" - AT5G58020 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002678AT5G58020 (E=8e-131) | unknown protein (355 aa)    
Predicted Functional Partners:
Bra031675
AT1G09620 (E=0.0) | ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding (1156 aa)
       
      0.619
Bra020007
AT1G09620 (E=0.0) | ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding (1048 aa)
       
      0.619
Bra021469
AT3G02320 (E=6e-295) | RNA binding / tRNA (guanine-N2-)-methyltransferase (573 aa)
       
      0.612
Bra008672
AT5G15810 (E=1e-135) | N2,N2-dimethylguanosine tRNA methyltransferase family protein (494 aa)
       
      0.612
Bra007237
AT3G56330 (E=4e-174) | N2,N2-dimethylguanosine tRNA methyltransferase family protein (338 aa)
       
      0.612
Bra006323
AT5G15810 (E=3e-291) | N2,N2-dimethylguanosine tRNA methyltransferase family protein (582 aa)
       
      0.612
Bra000791
AT4G04350 (E=0.0) EMB2369 | EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding (956 aa)
       
      0.569
Bra031571
AT1G07370 (E=5e-142) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
       
 
  0.561
Bra018377
AT1G07370 (E=2e-144) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
       
 
  0.561
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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