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Bra002682 protein (Brassica rapa) - STRING interaction network
"Bra002682" - AT5G58000 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002682AT5G58000 (E=6e-149) | LOCATED IN- endoplasmic reticulum, chloroplast; CONTAINS InterPro DOMAIN/s- Reticulon (InterPro-IPR003388); BEST Arabidopsis thaliana protein match is- reticulon family protein (TAIR-AT4G28430.1); Has 1047 Blast hits to 1034 proteins in 125 species- Archae - 0; Bacteria - 2; Metazoa - 715; Fungi - 46; Plants - 58; Viruses - 4; Other Eukaryotes - 222 (source- NCBI BLink). (580 aa)    
Predicted Functional Partners:
Bra006789
AT5G58003 (E=3e-177) CPL4 | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4); phosphoprotein phosphatase (568 aa)
           
  0.504
Bra002681
AT5G58003 (E=3e-177) CPL4 | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4); phosphoprotein phosphatase (525 aa)
           
  0.504
Bra029465
AT4G12610 (E=4e-099) RAP74, ATRAP74 | transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein (496 aa)
           
  0.485
Bra005487
AT2G33540 (E=0.0) CPL3, ATCPL3 | CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3); CTD phosphatase/ phosphoprotein phosphatase (1199 aa)
           
  0.451
Bra009548
AT5G03160 (E=8e-218) ATP58IPK | ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK); binding / heat shock protein binding (484 aa)
           
  0.426
Bra006853
AT5G56840 (E=4e-069) | DNA-binding family protein (212 aa)
           
  0.426
Bra035447
AT1G58290 (E=1e-242) HEMA1 | HEMA1; glutamyl-tRNA reductase (528 aa)
           
  0.410
Bra027877
AT1G58290 (E=2e-250) HEMA1 | HEMA1; glutamyl-tRNA reductase (532 aa)
           
  0.410
Bra012994
AT5G60940 (E=5e-171) | transducin family protein / WD-40 repeat family protein (447 aa)
           
  0.410
Bra005692
AT5G01270 (E=8e-194) CPL2, ATCPL2 | CPL2; double-stranded RNA binding / phosphatase (791 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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