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Bra002683 protein (Brassica rapa) - STRING interaction network
"Bra002683" - AT5G57990 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002683AT5G57990 (E=3e-205) UBP23 | UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23); ubiquitin thiolesterase/ ubiquitin-specific protease (982 aa)    
Predicted Functional Partners:
Bra033293
AT1G01040 (E=0.0) DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III (1846 aa)
     
 
    0.693
Bra031999
AT3G03300 (E=0.0) DCL2, ATDCL2 | DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III (1277 aa)
     
 
    0.693
Bra002293
AT5G20320 (E=0.0) DCL4, ATDCL4 | DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III (1641 aa)
     
 
    0.693
Bra040091
AT3G26560 (E=5e-178) | ATP-dependent RNA helicase, putative (791 aa)
     
      0.652
Bra025211
AT3G26560 (E=0.0) | ATP-dependent RNA helicase, putative (1171 aa)
     
      0.652
Bra015344
AT1G04730 (E=0.0) | AAA-type ATPase family protein (1622 aa)
     
        0.645
Bra024720
AT1G26370 (E=6e-250) | RNA helicase, putative (736 aa)
     
      0.643
Bra013313
AT4G18465 (E=0.0) | RNA helicase, putative (697 aa)
     
      0.643
Bra011023
AT1G26370 (E=2e-232) | RNA helicase, putative (689 aa)
     
      0.643
Bra010915
AT1G27900 (E=0.0) | RNA helicase, putative (705 aa)
     
      0.643
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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