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Bra002697 protein (Brassica rapa) - STRING interaction network
"Bra002697" - AT5G57780 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002697AT5G57780 (E=1e-067) | EXPRESSED IN- 18 plant structures; EXPRESSED DURING- 12 growth stages; BEST Arabidopsis thaliana protein match is- transcription factor (TAIR-AT4G30410.2); Has 70 Blast hits to 70 proteins in 6 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (161 aa)    
Predicted Functional Partners:
Bra004051
AT1G68100 (E=1e-162) IAR1 | IAR1 (IAA-ALANINE RESISTANT 1); metal ion transmembrane transporter (458 aa)
           
  0.506
Bra008491
AT1G80160 (E=1e-087) | lactoylglutathione lyase family protein / glyoxalase I family protein (167 aa)
           
  0.505
Bra006789
AT5G58003 (E=3e-177) CPL4 | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4); phosphoprotein phosphatase (568 aa)
           
  0.456
Bra002681
AT5G58003 (E=3e-177) CPL4 | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4); phosphoprotein phosphatase (525 aa)
           
  0.456
Bra036645
AT1G79320 (E=3e-076) AtMC6 | AtMC6 (metacaspase 6); cysteine-type endopeptidase (322 aa)
           
  0.418
Bra035109
AT1G79340 (E=4e-184) AtMC4 | AtMC4 (metacaspase 4); cysteine-type peptidase (416 aa)
           
  0.418
Bra035108
AT1G79330 (E=1e-158) AMC6, ATMCP2B, ATMC5 | ATMC5 (ARABIDOPSIS THALIANA METACASPASE 5); cysteine-type endopeptidase (392 aa)
           
  0.418
Bra035107
AT1G79320 (E=1e-155) AtMC6 | AtMC6 (metacaspase 6); cysteine-type endopeptidase (375 aa)
           
  0.418
Bra035106
AT1G79330 (E=3e-059) AMC6, ATMCP2B, ATMC5 | ATMC5 (ARABIDOPSIS THALIANA METACASPASE 5); cysteine-type endopeptidase (389 aa)
           
  0.418
Bra032430
AT1G02170 (E=5e-167) LOL3, ATMCPB1, MCP1B, AMC1, ATMC1 | AMC1 (METACASPASE 1); cysteine-type endopeptidase (604 aa)
           
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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