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Bra002701 protein (Brassica rapa) - STRING interaction network
"Bra002701" - AT1G14800 in Brassica rapa
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Bra002701AT1G14800 (E=8e-007) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Nucleic acid-binding, OB-fold (InterPro-IPR012340), Nucleic acid-binding, OB-fold-like (InterPro-IPR016027); BEST Arabidopsis thaliana protein match is- F-box family protein (TAIR-AT2G35280.1); Has 109 Blast hits to 109 proteins in 8 species- Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (384 aa)    
Predicted Functional Partners:
Bra031571
AT1G07370 (E=5e-142) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
   
 
  0.800
Bra018377
AT1G07370 (E=2e-144) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
   
 
  0.800
Bra003096
AT5G52910 (E=4e-275) ATIM | ATIM (TIMELESS) (1174 aa)
     
 
  0.790
Bra031643
AT1G08840 (E=0.0) emb2411 | emb2411 (embryo defective 2411); ATP binding / ATP-dependent DNA helicase/ DNA binding (1296 aa)
   
 
  0.770
Bra029467
AT4G30870 (E=1e-182) ATMUS81, MUS81 | MUS81 (MMS AND UV SENSITIVE 81); endonuclease/ nucleic acid binding (627 aa)
     
 
  0.676
Bra024253
AT5G63960 (E=0.0) EMB2780 | EMB2780 (EMBRYO DEFECTIVE 2780); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding (1150 aa)
     
 
  0.643
Bra024017
AT4G31210 (E=0.0) | DNA topoisomerase family protein ; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (1177 aa)
     
 
  0.622
Bra011253
AT4G31210 (E=0.0) | DNA topoisomerase family protein ; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (1189 aa)
     
 
  0.622
Bra031944
AT5G63920 (E=0.0) | DNA topoisomerase III alpha, putative ; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (921 aa)
     
 
  0.619
Bra024248
AT5G63920 (E=2e-013) | DNA topoisomerase III alpha, putative (118 aa)
     
 
  0.619
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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