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Bra002710 protein (Brassica rapa) - STRING interaction network
"Bra002710" - AT5G57655 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002710AT5G57655 (E=4e-265) | xylose isomerase family protein (477 aa)    
Predicted Functional Partners:
Bra018175
AT5G49650 (E=9e-269) | xylulose kinase, putative (546 aa)
 
   
  0.970
Bra022440
AT3G19620 (E=1e-244) | glycosyl hydrolase family 3 protein (771 aa)
       
  0.926
Bra014816
AT3G54440 (E=0.0) | glycoside hydrolase family 2 protein (1104 aa)
         
  0.906
Bra028288
AT5G51970 (E=5e-196) | sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative (346 aa)
         
  0.903
Bra030634
AT1G06020 (E=1e-167) | pfkB-type carbohydrate kinase family protein (347 aa)
         
  0.901
Bra029158
AT5G51830 (E=2e-155) | pfkB-type carbohydrate kinase family protein (343 aa)
         
  0.901
Bra028279
AT5G51830 (E=3e-150) | pfkB-type carbohydrate kinase family protein (343 aa)
         
  0.901
Bra022839
AT2G31390 (E=3e-173) | pfkB-type carbohydrate kinase family protein (325 aa)
         
  0.901
Bra018248
AT2G31390 (E=3e-176) | pfkB-type carbohydrate kinase family protein (325 aa)
         
  0.901
Bra014540
AT3G59480 (E=6e-175) | pfkB-type carbohydrate kinase family protein (326 aa)
         
  0.901
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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