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Bra002719 protein (Brassica rapa) - STRING interaction network
"Bra002719" - AT5G57560 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Bra002719AT5G57560 (E=3e-150) TCH4, XTH22 | TCH4 (Touch 4); hydrolase, acting on glycosyl bonds / xyloglucan-xyloglucosyl transferase ; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (283 aa)    
Predicted Functional Partners:
Bra006584
AT5G20890 (E=2e-288) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (748 aa)
       
 
  0.579
Bra034061
AT3G09270 (E=1e-105) ATGSTU8 | ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8); glutathione transferase (226 aa)
           
  0.501
Bra012848
AT3G51590 (E=4e-052) LTP12 | LTP12 (LIPID TRANSFER PROTEIN 12); lipid binding ; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (119 aa)
           
  0.501
Bra025439
AT5G37770 (E=2e-072) TCH2, CML24 | TCH2 (TOUCH 2); calcium ion binding (160 aa)
     
 
  0.498
Bra031234
AT3G20840 (E=6e-252) PLT1 | PLT1 (PLETHORA 1); transcription factor (557 aa)
           
  0.483
Bra030451
AT1G51190 (E=1e-251) PLT2 | PLT2 (PLETHORA 2); transcription factor (564 aa)
           
  0.483
Bra018899
AT1G51190 (E=1e-225) PLT2 | PLT2 (PLETHORA 2); transcription factor (559 aa)
           
  0.483
Bra017852
AT4G37750 (E=4e-222) ANT, DRG, CKC, CKC1 | ANT (AINTEGUMENTA); DNA binding / transcription factor (556 aa)
           
  0.483
Bra013978
AT5G17430 (E=6e-254) BBM | BBM (BABY BOOM); DNA binding / transcription factor (579 aa)
           
  0.483
Bra011782
AT4G37750 (E=1e-237) ANT, DRG, CKC, CKC1 | ANT (AINTEGUMENTA); DNA binding / transcription factor (545 aa)
           
  0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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