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Bra002722 protein (Brassica rapa) - STRING interaction network
"Bra002722" - AT5G57550 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Bra002722AT5G57550 (E=2e-146) XTR3 | XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3); hydrolase, acting on glycosyl bonds / xyloglucan-xyloglucosyl transferase ; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (284 aa)    
Predicted Functional Partners:
Bra006584
AT5G20890 (E=2e-288) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (748 aa)
       
 
  0.579
Bra039271
AT2G46600 (E=2e-059) | calcium-binding protein, putative (133 aa)
     
 
  0.424
Bra022723
AT5G54490 (E=4e-053) PBP1 | PBP1 (PINOID-BINDING PROTEIN 1); calcium ion binding / protein binding (131 aa)
     
 
  0.424
Bra004524
AT2G46600 (E=4e-052) | calcium-binding protein, putative (109 aa)
     
 
  0.424
Bra002984
AT4G27280 (E=6e-051) | calcium-binding EF hand family protein (131 aa)
     
 
  0.424
Bra000430
AT2G46600 (E=2e-058) | calcium-binding protein, putative (118 aa)
     
 
  0.424
Bra009398
AT5G09730 (E=2e-198) BXL3, ATBXL3, XYL3, ATBX3, BX3 | BXL3 (beta-xylosidase 3); hydrolase, hydrolyzing O-glycosyl compounds (637 aa)
       
  0.424
Bra026364
AT4G27270 (E=2e-062) | quinone reductase family protein (292 aa)
     
   
  0.419
Bra037782
AT5G64570 (E=0.0) XYL4, ATBXL4 | XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (776 aa)
       
  0.417
Bra036143
AT5G49360 (E=0.0) BXL1, ATBXL1 | BXL1 (BETA-XYLOSIDASE 1); hydrolase, hydrolyzing O-glycosyl compounds (771 aa)
       
  0.417
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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