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Bra002731 protein (Brassica rapa) - STRING interaction network
"Bra002731" - AT1G12410 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002731AT1G12410 (E=4e-014) CLPR2, NCLPP2, CLP2 | CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2); serine-type endopeptidase (49 aa)    
Predicted Functional Partners:
Bra029073
AT5G53350 (E=3e-169) CLPX | CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (526 aa)
   
  0.927
Bra027997
AT1G33360 (E=8e-236) | ATP-dependent Clp protease ATP-binding subunit ClpX, putative (616 aa)
   
  0.927
Bra003063
AT5G53350 (E=2e-218) CLPX | CLPX; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (558 aa)
   
  0.927
Bra003041
AT5G49840 (E=4e-213) | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (605 aa)
   
  0.927
Bra020463
AT5G57130 (E=1e-289) | protein binding (866 aa)
   
 
  0.815
Bra033427
AT3G52490 (E=0.0) | heat shock protein-related (796 aa)
   
 
  0.814
Bra032044
AT2G25140 (E=1e-159) HSP98.7, CLPB-M, CLPB4 | CLPB4 (CASEIN LYTIC PROTEINASE B4); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (794 aa)
   
 
  0.814
Bra031556
AT1G07200 (E=0.0) | ATP-dependent Clp protease ClpB protein-related (951 aa)
   
 
  0.814
Bra029922
AT3G48870 (E=0.0) ATCLPC, ATHSP93-III, HSP93-III | HSP93-III; ATP binding / ATPase/ DNA binding / nuclease/ nucleoside-triphosphatase/ nucleotide binding / protein binding (928 aa)
   
 
  0.814
Bra029193
AT5G51070 (E=0.0) ERD1, CLPD | ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (943 aa)
   
 
  0.814
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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