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Bra002749 protein (Brassica rapa) - STRING interaction network
"Bra002749" - AT5G57210 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002749AT5G57210 (E=3e-291) | microtubule-associated protein-related (753 aa)    
Predicted Functional Partners:
Bra026315
AT4G27690 (E=3e-170) VPS26B | VPS26B (VACUOLAR PROTEIN SORTING 26B) (303 aa)
     
 
  0.651
Bra022659
AT5G53530 (E=5e-087) VPS26A | VPS26A (VACUOLAR PROTEIN SORTING 26A) (343 aa)
     
 
  0.651
Bra003049
AT5G53530 (E=3e-167) VPS26A | VPS26A (VACUOLAR PROTEIN SORTING 26A) (302 aa)
     
 
  0.651
Bra041095
AT1G53320 (E=9e-176) AtTLP7 | AtTLP7 (TUBBY LIKE PROTEIN 7); phosphoric diester hydrolase/ transcription factor (377 aa)
       
 
  0.633
Bra040862
AT1G47270 (E=3e-178) AtTLP6 | AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor (396 aa)
       
 
  0.633
Bra040803
AT1G76900 (E=1e-211) AtTLP1 | AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor (447 aa)
       
 
  0.633
Bra039620
AT2G18280 (E=9e-120) AtTLP2 | AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor (378 aa)
       
 
  0.633
Bra030942
AT1G53320 (E=1e-177) AtTLP7 | AtTLP7 (TUBBY LIKE PROTEIN 7); phosphoric diester hydrolase/ transcription factor (392 aa)
       
 
  0.633
Bra026081
AT1G16070 (E=1e-195) AtTLP8 | AtTLP8 (TUBBY LIKE PROTEIN 8); transcription factor (389 aa)
       
 
  0.633
Bra024763
AT1G25280 (E=3e-204) AtTLP10 | AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor (438 aa)
       
 
  0.633
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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