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Bra002751 protein (Brassica rapa) - STRING interaction network
"Bra002751" - AT5G57190 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra002751AT5G57190 (E=1e-245) PSD2 | PSD2 (phosphatidylserine decarboxylase 2); phosphatidylserine decarboxylase (509 aa)    
Predicted Functional Partners:
Bra038501
AT4G16700 (E=4e-184) PSD1 | PSD1 (phosphatidylserine decarboxylase 1); phosphatidylserine decarboxylase (445 aa)
       
  0.786
Bra013506
AT4G16700 (E=1e-016) PSD1 | PSD1 (phosphatidylserine decarboxylase 1); phosphatidylserine decarboxylase (207 aa)
       
  0.786
Bra027001
AT1G63050 (E=6e-242) | membrane bound O-acyl transferase (MBOAT) family protein (467 aa)
       
  0.780
Bra019778
AT1G12640 (E=3e-244) | membrane bound O-acyl transferase (MBOAT) family protein (466 aa)
       
  0.780
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
   
   
  0.705
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
   
   
  0.705
Bra000374
AT2G45150 (E=4e-161) | phosphatidate cytidylyltransferase family protein (632 aa)
     
 
  0.643
Bra026734
AT1G16040 (E=3e-091) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- GPI anchor biosynthetic process; LOCATED IN- integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- GPI biosynthesis protein Pig-F (InterPro-IPR009580); Has 210 Blast hits to 210 proteins in 94 species- Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 80; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (232 aa)
       
      0.620
Bra026083
AT1G16040 (E=3e-089) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- GPI anchor biosynthetic process; LOCATED IN- integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- GPI biosynthesis protein Pig-F (InterPro-IPR009580); Has 210 Blast hits to 210 proteins in 94 species- Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 80; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (231 aa)
       
      0.620
Bra016643
AT1G16040 (E=7e-084) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- GPI anchor biosynthetic process; LOCATED IN- integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- GPI biosynthesis protein Pig-F (InterPro-IPR009580); Has 210 Blast hits to 210 proteins in 94 species- Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 80; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (231 aa)
       
      0.620
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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