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Bra002753 protein (Brassica rapa) - STRING interaction network
"Bra002753" - AT5G57170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002753AT5G57170 (E=8e-060) | macrophage migration inhibitory factor family protein / MIF family protein (115 aa)    
Predicted Functional Partners:
Bra011314
AT4G31990 (E=9e-249) ASP5, AAT3, ATAAT1 | ASP5 (ASPARTATE AMINOTRANSFERASE 5); L-aspartate-2-oxoglutarate aminotransferase (815 aa)
       
  0.901
Bra023969
AT4G31990 (E=2e-252) ASP5, AAT3, ATAAT1 | ASP5 (ASPARTATE AMINOTRANSFERASE 5); L-aspartate-2-oxoglutarate aminotransferase (453 aa)
         
  0.897
Bra021682
AT2G30970 (E=1e-231) ASP1 | ASP1 (ASPARTATE AMINOTRANSFERASE 1); L-aspartate-2-oxoglutarate aminotransferase (426 aa)
         
  0.897
Bra020047
AT5G19550 (E=7e-220) ASP2, AAT2 | ASP2 (ASPARTATE AMINOTRANSFERASE 2); L-aspartate-2-oxoglutarate aminotransferase (405 aa)
         
  0.897
Bra006103
AT5G11520 (E=1e-238) ASP3, YLS4 | ASP3 (ASPARTATE AMINOTRANSFERASE 3); L-aspartate-2-oxoglutarate aminotransferase (452 aa)
         
  0.897
Bra002245
AT5G19550 (E=7e-220) ASP2, AAT2 | ASP2 (ASPARTATE AMINOTRANSFERASE 2); L-aspartate-2-oxoglutarate aminotransferase (405 aa)
         
  0.897
Bra034522
AT1G62800 (E=2e-194) ASP4 | ASP4 (ASPARTATE AMINOTRANSFERASE 4); catalytic/ pyridoxal phosphate binding / transaminase/ transferase, transferring nitrogenous groups (454 aa)
     
 
  0.544
Bra036647
AT1G62800 (E=5e-202) ASP4 | ASP4 (ASPARTATE AMINOTRANSFERASE 4); catalytic/ pyridoxal phosphate binding / transaminase/ transferase, transferring nitrogenous groups (405 aa)
         
  0.536
Bra027015
AT1G62800 (E=1e-190) ASP4 | ASP4 (ASPARTATE AMINOTRANSFERASE 4); catalytic/ pyridoxal phosphate binding / transaminase/ transferase, transferring nitrogenous groups (403 aa)
         
  0.536
Bra018286
AT2G30970 (E=2e-219) ASP1 | ASP1 (ASPARTATE AMINOTRANSFERASE 1); L-aspartate-2-oxoglutarate aminotransferase (424 aa)
         
  0.536
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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