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Bra002755 protein (Brassica rapa) - STRING interaction network
"Bra002755" - AT5G57160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002755AT5G57160 (E=0.0) ATLIG4, LIG4 | ATLIG4; DNA ligase (ATP)/ protein binding (1206 aa)    
Predicted Functional Partners:
Bra014100
AT1G48050 (E=0.0) KU80, ATKU80 | KU80; double-stranded DNA binding / protein binding ; Single-stranded DNA-dependent ATP-dependent helicase (682 aa)
     
  0.983
Bra026012
AT1G16970 (E=1e-299) KU70, ATKU70 | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG); double-stranded DNA binding / protein binding (577 aa)
     
  0.980
Bra031571
AT1G07370 (E=5e-142) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
     
  0.970
Bra018377
AT1G07370 (E=2e-144) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
     
  0.970
Bra019530
AT3G48190 (E=0.0) ATM, ATATM | ATM (ATAXIA-TELANGIECTASIA MUTATED); 1-phosphatidylinositol-3-phosphate 5-kinase (2957 aa)
     
 
  0.957
Bra018079
AT3G48190 (E=2e-250) ATM, ATATM | ATM (ATAXIA-TELANGIECTASIA MUTATED); 1-phosphatidylinositol-3-phosphate 5-kinase (893 aa)
     
 
  0.953
Bra027296
AT3G14890 (E=3e-166) | phosphoesterase (602 aa)
     
  0.878
Bra001572
AT3G14890 (E=7e-126) | phosphoesterase (460 aa)
     
  0.878
Bra004084
AT1G67500 (E=0.0) ATREV3 | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3); DNA binding / DNA-directed DNA polymerase (1822 aa)
     
  0.876
Bra018434
AT1G10520 (E=3e-240) | DNA polymerase lambda (POLL) (524 aa)
     
  0.872
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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