STRINGSTRING
Bra002765 protein (Brassica rapa) - STRING interaction network
"Bra002765" - AT5G57060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002765AT5G57060 (E=7e-064) | unknown protein (137 aa)    
Predicted Functional Partners:
Bra031536
AT1G06750 (E=2e-254) | unknown protein (497 aa)
           
  0.545
Bra016121
AT1G71740 (E=4e-053) | unknown protein (133 aa)
           
  0.505
Bra037891
AT4G09900 (E=1e-165) ATMES12, MES12 | MES12 (METHYL ESTERASE 12); hydrolase (349 aa)
           
  0.483
Bra036738
AT1G33990 (E=2e-181) ATMES14, MES14 | MES14 (METHYL ESTERASE 14); hydrolase (346 aa)
           
  0.483
Bra033110
AT3G29770 (E=2e-153) ATMES11, MES11 | MES11 (METHYL ESTERASE 11); hydrolase (377 aa)
           
  0.483
Bra028024
AT1G33990 (E=1e-172) ATMES14, MES14 | MES14 (METHYL ESTERASE 14); hydrolase (325 aa)
           
  0.483
Bra025404
AT3G29770 (E=6e-165) ATMES11, MES11 | MES11 (METHYL ESTERASE 11); hydrolase (384 aa)
           
  0.483
Bra013479
AT4G20870 (E=7e-140) FAH2, ATFAH2 | FAH2 (FATTY ACID HYDROXYLASE 2); catalytic/ fatty acid alpha-hydroxylase (237 aa)
           
  0.475
Bra009516
AT5G03700 (E=5e-228) | PAN domain-containing protein (482 aa)
           
  0.470
Bra037380
AT4G01150 (E=7e-064) | unknown protein (162 aa)
           
  0.463
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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