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Bra002769 protein (Brassica rapa) - STRING interaction network
"Bra002769" - AT5G57030 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002769AT5G57030 (E=3e-255) LUT2 | LUT2 (LUTEIN DEFICIENT 2); lycopene epsilon cyclase (530 aa)    
Predicted Functional Partners:
Bra040411
AT3G04870 (E=4e-291) ZDS, PDE181 | ZDS (ZETA-CAROTENE DESATURASE); carotene 7,8-desaturase ; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7’ (561 aa)
   
 
  0.968
Bra031539
AT1G06820 (E=3e-256) CRTISO, CCR2 | CRTISO (CAROTENOID ISOMERASE); carotenoid isomerase (589 aa)
     
 
  0.955
Bra029825
AT3G10230 (E=4e-257) LYC | LYC (LYCOPENE CYCLASE); lycopene beta cyclase (493 aa)
   
   
0.913
Bra032770
AT4G14210 (E=8e-310) PDS3, PDS, PDE226 | PDS3 (PHYTOENE DESATURASE 3); phytoene dehydrogenase (563 aa)
   
 
  0.826
Bra010751
AT4G14210 (E=4e-169) PDS3, PDS, PDE226 | PDS3 (PHYTOENE DESATURASE 3); phytoene dehydrogenase (557 aa)
   
 
  0.802
Bra027908
AT1G57770 (E=1e-288) | amine oxidase family (585 aa)
     
 
  0.748
Bra033518
AT5G49555 (E=3e-031) | amine oxidase-related (140 aa)
     
 
  0.718
Bra033517
AT5G49555 (E=2e-226) | amine oxidase-related (567 aa)
     
 
  0.718
Bra038437
AT1G31800 (E=4e-234) CYP97A3, LUT5 | CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3); carotene beta-ring hydroxylase/ oxygen binding (544 aa)
     
 
  0.694
Bra019145
AT4G25700 (E=4e-113) BETA-OHASE 1, B1, chy1 | BETA-OHASE 1 (BETA-HYDROXYLASE 1); carotene beta-ring hydroxylase (300 aa)
         
  0.680
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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