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Bra002778 protein (Brassica rapa) - STRING interaction network
"Bra002778" - AT5G56950 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002778AT5G56950 (E=4e-141) NFA03, NFA3, NAP1;3 | NAP1;3 (NUCLEOSOME ASSEMBLY PROTEIN 1;3); DNA binding (415 aa)    
Predicted Functional Partners:
Bra012465
AT1G26170 (E=3e-295) | binding / protein transporter (951 aa)
     
 
  0.949
Bra028590
AT5G10360 (E=1e-108) EMB3010 | EMB3010 (embryo defective 3010); structural constituent of ribosome (249 aa)
     
 
  0.919
Bra010227
AT4G31700 (E=4e-100) RPS6 | RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome (250 aa)
     
 
  0.919
Bra009039
AT4G31700 (E=4e-111) RPS6 | RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome (249 aa)
     
 
  0.919
Bra006056
AT5G10360 (E=4e-098) EMB3010 | EMB3010 (embryo defective 3010); structural constituent of ribosome (249 aa)
     
 
  0.919
Bra039161
AT3G02190 (E=3e-017) | 60S ribosomal protein L39 (RPL39B) (51 aa)
     
      0.913
Bra032033
AT4G31985 (E=5e-025) | 60S ribosomal protein L39 (RPL39C) (52 aa)
     
      0.910
Bra023970
AT4G31985 (E=2e-024) | 60S ribosomal protein L39 (RPL39C) (55 aa)
     
      0.910
Bra004740
AT2G43060 (E=7e-051) | transcription factor (157 aa)
       
      0.907
Bra018984
AT1G52740 (E=1e-068) HTA9 | HTA9 (HISTONE H2A PROTEIN 9); DNA binding (135 aa)
       
 
  0.898
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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