STRINGSTRING
Bra002780 protein (Brassica rapa) - STRING interaction network
"Bra002780" - AT5G56930 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002780AT5G56930 (E=5e-023) emb1789 | emb1789 (embryo defective 1789); nucleic acid binding / zinc ion binding (132 aa)    
Predicted Functional Partners:
Bra001208
AT3G66652 (E=1e-128) | fip1 motif-containing protein (1267 aa)
     
  0.999
Bra009712
AT5G23880 (E=0.0) EMB1265, CPSF100, ESP5, ATCPSF100 | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100); DNA binding / protein binding (739 aa)
     
  0.983
Bra022557
AT5G51660 (E=0.0) CPSF160, ATCPSF160 | CPSF160; nucleic acid binding (1448 aa)
     
  0.983
Bra016588
AT1G17760 (E=5e-211) CSTF77, ATCSTF77 | CSTF77; protein binding (724 aa)
     
  0.983
Bra012994
AT5G60940 (E=5e-171) | transducin family protein / WD-40 repeat family protein (447 aa)
     
  0.982
Bra038629
AT5G63420 (E=0.0) emb2746 | emb2746 (embryo defective 2746); DNA binding / catalytic/ hydrolase (907 aa)
     
  0.978
Bra031460
AT1G61010 (E=0.0) CPSF73-I | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I); protein binding (694 aa)
     
  0.978
Bra023416
AT5G13480 (E=3e-256) FY | FY; protein binding (647 aa)
     
  0.978
Bra006202
AT5G13480 (E=7e-266) FY | FY; protein binding (662 aa)
     
  0.978
Bra006786
AT5G58040 (E=1e-164) ATFIP1[V] | ATFIP1[V] (Arabidopsis homolog of yeast Fip1 [V]); RNA binding / protein binding (1047 aa)
     
  0.977
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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