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Bra002785 protein (Brassica rapa) - STRING interaction network
"Bra002785" - AT5G56900 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002785AT5G56900 (E=6e-224) | CwfJ-like family protein / zinc finger (CCCH-type) family protein (604 aa)    
Predicted Functional Partners:
Bra030798
AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (847 aa)
     
 
  0.944
Bra027160
AT1G09770 (E=4e-100) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (236 aa)
     
 
  0.944
Bra019993
AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (844 aa)
     
 
  0.944
Bra023985
AT4G31770 (E=1e-195) ATDBR1, DBR1 | calcineurin-like phosphoesterase family protein (416 aa)
     
 
  0.938
Bra010221
AT4G31770 (E=3e-193) ATDBR1, DBR1 | calcineurin-like phosphoesterase family protein (598 aa)
     
 
  0.938
Bra019919
AT1G10580 (E=1e-303) | transducin family protein / WD-40 repeat family protein (565 aa)
     
 
  0.930
Bra038786
AT4G21110 (E=2e-085) | G10 family protein (145 aa)
       
      0.918
Bra020886
AT4G21110 (E=1e-085) | G10 family protein (145 aa)
       
      0.918
Bra013502
AT4G21110 (E=3e-084) | G10 family protein (145 aa)
       
      0.918
Bra030575
AT1G04510 (E=2e-207) | transducin family protein / WD-40 repeat family protein (574 aa)
     
      0.913
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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