STRINGSTRING
Bra002794 protein (Brassica rapa) - STRING interaction network
"Bra002794" - AT5G56750 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002794AT5G56750 (E=2e-160) | Ndr family protein (292 aa)    
Predicted Functional Partners:
Bra012994
AT5G60940 (E=5e-171) | transducin family protein / WD-40 repeat family protein (447 aa)
       
      0.602
Bra034628
AT4G34460 (E=6e-191) AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding (378 aa)
       
 
  0.533
Bra017658
AT4G34460 (E=1e-193) AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding (378 aa)
       
 
  0.533
Bra011536
AT4G34460 (E=6e-207) AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding (377 aa)
       
 
  0.533
Bra017802
AT4G36960 (E=6e-171) | RNA recognition motif (RRM)-containing protein (408 aa)
       
      0.504
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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