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Bra002795 protein (Brassica rapa) - STRING interaction network
"Bra002795" - AT5G56740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002795AT5G56740 (E=3e-225) HAG2, HAC7, HAG02, HAC07 | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2); H4 histone acetyltransferase/ histone acetyltransferase (460 aa)    
Predicted Functional Partners:
Bra040678
AT2G19520 (E=2e-267) FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | FVE; metal ion binding (497 aa)
     
  0.976
Bra039109
AT2G31530 (E=2e-034) EMB2289, SCY2 | EMB2289 (EMBRYO DEFECTIVE 2289); P-P-bond-hydrolysis-driven protein transmembrane transporter (286 aa)
     
  0.976
Bra037289
AT2G16780 (E=1e-225) MSI2, MSI02, NFC02, NFC2 | MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2) (413 aa)
     
  0.976
Bra036717
AT2G19520 (E=1e-182) FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | FVE; metal ion binding (480 aa)
     
  0.976
Bra031085
AT2G19520 (E=6e-271) FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | FVE; metal ion binding (504 aa)
     
  0.976
Bra029080
AT5G58230 (E=2e-025) MSI1, MEE70, ATMSI1 | MSI1 (MULTICOPY SUPRESSOR OF IRA1); protein binding (227 aa)
     
  0.976
Bra020379
AT5G58230 (E=2e-165) MSI1, MEE70, ATMSI1 | MSI1 (MULTICOPY SUPRESSOR OF IRA1); protein binding (416 aa)
     
  0.976
Bra011133
AT4G29730 (E=5e-123) NFC5, MSI5 | NFC5 (Nucleosome/chromatin assembly factor group C 5) (476 aa)
     
  0.976
Bra002667
AT5G58230 (E=6e-225) MSI1, MEE70, ATMSI1 | MSI1 (MULTICOPY SUPRESSOR OF IRA1); protein binding (426 aa)
     
  0.976
Bra001997
AT2G16780 (E=5e-228) MSI2, MSI02, NFC02, NFC2 | MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2) (418 aa)
     
  0.976
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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