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Bra002798.1-P protein (Brassica rapa) - STRING interaction network
"Bra002798.1-P" - AT5G56710 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002798.1-PAT5G56710 (E=4e-050) | 60S ribosomal protein L31 (RPL31C) (119 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
  0.999
Bra034356
AT1G08310 (E=7e-134) | esterase/lipase/thioesterase family protein (641 aa)
   
  0.999
Bra020193
AT5G22440 (E=7e-094) | 60S ribosomal protein L10A (RPL10aC) (197 aa)
   
  0.999
Bra018631
AT2G27530 (E=9e-089) PGY1 | PGY1 (PIGGYBACK1); RNA binding / structural constituent of ribosome (226 aa)
   
  0.999
Bra012012
AT2G27530 (E=2e-098) PGY1 | PGY1 (PIGGYBACK1); RNA binding / structural constituent of ribosome (211 aa)
   
  0.999
Bra006626
AT5G22450 (E=0.0) | unknown protein (1306 aa)
   
  0.999
Bra002411
AT5G22440 (E=1e-100) | 60S ribosomal protein L10A (RPL10aC) (212 aa)
   
  0.999
Bra040064
AT4G31985 (E=1e-015) | 60S ribosomal protein L39 (RPL39C) (65 aa)
   
  0.999
Bra039161
AT3G02190 (E=3e-017) | 60S ribosomal protein L39 (RPL39B) (51 aa)
   
  0.999
Bra032033
AT4G31985 (E=5e-025) | 60S ribosomal protein L39 (RPL39C) (52 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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