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Bra002799 protein (Brassica rapa) - STRING interaction network
"Bra002799" - AT5G56680 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Bra002799AT5G56680 (E=1e-252) SYNC1, EMB2755, SYNC1 ARATH | SYNC1; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding (575 aa)    
Predicted Functional Partners:
Bra040811
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (802 aa)
   
  0.983
Bra032735
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (792 aa)
   
  0.983
Bra001942
AT1G48520 (E=2e-241) GATB | GATB (GLU-ADT SUBUNIT B); carbon-nitrogen ligase, with glutamine as amido-N-donor / glutaminyl-tRNA synthase (glutamine-hydrolyzing)/ ligase (531 aa)
   
  0.979
GATA
AT3G25660 (E=3e-220) | glutamyl-tRNA(Gln) amidotransferase, putative ; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln) (414 aa)
   
  0.965
Bra015031
AT1G48520 (E=1e-032) GATB | GATB (GLU-ADT SUBUNIT B); carbon-nitrogen ligase, with glutamine as amido-N-donor / glutaminyl-tRNA synthase (glutamine-hydrolyzing)/ ligase (108 aa)
   
  0.909
Bra037036
AT4G32915 (E=1e-047) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- regulation of translational fidelity; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Glu-tRNAGln amidotransferase, C subunit (InterPro-IPR003837); Has 1227 Blast hits to 1227 proteins in 425 species- Archae - 17; Bacteria - 884; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 309 (source- NCBI BLink). (142 aa)
     
 
    0.896
Bra034541
AT4G32915 (E=5e-054) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- regulation of translational fidelity; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Glu-tRNAGln amidotransferase, C subunit (InterPro-IPR003837); Has 1227 Blast hits to 1227 proteins in 425 species- Archae - 17; Bacteria - 884; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 309 (source- NCBI BLink). (145 aa)
     
 
    0.896
Bra009383
AT5G09420 (E=2e-282) ATTOC64-V, MTOM64 | ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V); amidase/ binding / carbon-nitrogen ligase, with glutamine as amido-N-donor (923 aa)
   
  0.893
Bra000791
AT4G04350 (E=0.0) EMB2369 | EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding (956 aa)
   
  0.881
Bra031675
AT1G09620 (E=0.0) | ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding (1156 aa)
   
  0.881
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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