STRINGSTRING
Bra002803 protein (Brassica rapa) - STRING interaction network
"Bra002803" - AT5G56610 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002803AT5G56610 (E=6e-094) | dual specificity protein phosphatase family protein (271 aa)    
Predicted Functional Partners:
Bra013303
AT4G18380 (E=3e-142) | F-box family protein (377 aa)
           
  0.474
Bra040021
AT3G07660 (E=0.0) | unknown protein (822 aa)
           
  0.447
Bra029667
AT3G07660 (E=0.0) | unknown protein (826 aa)
           
  0.447
Bra025506
AT5G41330 (E=2e-205) | potassium channel tetramerisation domain-containing protein (456 aa)
           
  0.441
Bra039305
AT2G45910 (E=0.0) | protein kinase family protein / U-box domain-containing protein (829 aa)
           
  0.410
Bra004947
AT2G45910 (E=2e-263) | protein kinase family protein / U-box domain-containing protein (801 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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