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Bra002804 protein (Brassica rapa) - STRING interaction network
"Bra002804" - AT5G56600 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002804AT5G56600 (E=2e-065) PFN3, PRF3 | PRF3 (PROFILIN 3); actin binding ; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations (131 aa)    
Predicted Functional Partners:
Bra002571
AT3G46520 (E=1e-217) ACT12 | ACT12 (ACTIN-12); structural constituent of cytoskeleton (605 aa)
     
  0.903
Bra037560
AT3G18780 (E=2e-178) ACT2, DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton (353 aa)
     
  0.901
Bra035607
AT5G56180 (E=2e-224) ATARP8, ARP8 | ATARP8 (ACTIN-RELATED PROTEIN 8); structural constituent of cytoskeleton (466 aa)
     
  0.901
Bra034778
AT3G12110 (E=5e-219) ACT11 | ACT11 (actin-11); structural constituent of cytoskeleton (377 aa)
     
  0.901
Bra033819
AT3G46520 (E=3e-218) ACT12 | ACT12 (ACTIN-12); structural constituent of cytoskeleton (377 aa)
     
  0.901
Bra030818
AT3G33520 (E=1e-099) ATARP6, ARP6, SUF3, ESD1 | ATARP6; structural constituent of cytoskeleton (222 aa)
     
  0.901
Bra030457
AT2G37620 (E=2e-033) ACT1, AAc1 | ACT1 (ACTIN 1); structural constituent of cytoskeleton (103 aa)
     
  0.901
Bra028615
AT5G09810 (E=2e-218) ACT2, ACT7 | ACT7 (ACTIN 7); structural constituent of cytoskeleton (377 aa)
     
  0.901
Bra022356
AT3G18780 (E=2e-097) ACT2, DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton (323 aa)
     
  0.901
Bra020319
AT3G46520 (E=6e-155) ACT12 | ACT12 (ACTIN-12); structural constituent of cytoskeleton (340 aa)
     
  0.901
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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