STRINGSTRING
Bra002819 protein (Brassica rapa) - STRING interaction network
"Bra002819" - AT3G54910 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002819AT3G54910 (E=5e-110) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- FBD (InterPro-IPR013596), FBD-like (InterPro-IPR006566), Leucine-rich repeat 2 (InterPro-IPR013101); BEST Arabidopsis thaliana protein match is- F-box family protein (TAIR-AT4G10400.2); Has 661 Blast hits to 647 proteins in 8 species- Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 657; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (761 aa)    
Predicted Functional Partners:
Bra022303
AT3G18150 (E=5e-072) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Cyclin-like F-box (InterPro-IPR001810), Leucine-rich repeat 2 (InterPro-IPR013101); BEST Arabidopsis thaliana protein match is- F-box family protein (TAIR-AT5G02910.1). (338 aa)
           
  0.428
Bra011614
AT3G18150 (E=6e-068) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Cyclin-like F-box (InterPro-IPR001810), Leucine-rich repeat 2 (InterPro-IPR013101); BEST Arabidopsis thaliana protein match is- F-box family protein (TAIR-AT5G02910.1). (382 aa)
           
  0.428
Bra036715
AT3G04660 (E=1e-134) | F-box family protein (396 aa)
           
  0.424
Bra028231
AT5G39250 (E=2e-120) | F-box family protein (251 aa)
           
  0.424
Bra027473
AT5G43190 (E=4e-159) | F-box family protein (FBX6) (357 aa)
           
  0.424
Bra023762
AT3G23260 (E=1e-079) | F-box family protein (373 aa)
           
  0.424
Bra023761
AT3G23260 (E=2e-086) | F-box family protein (373 aa)
           
  0.424
Bra022444
AT3G23260 (E=4e-078) | F-box family protein (379 aa)
           
  0.424
Bra020625
AT5G49610 (E=7e-183) | F-box family protein (363 aa)
           
  0.424
Bra010723
AT4G38870 (E=2e-085) | F-box family protein (240 aa)
           
  0.424
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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