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Bra002825 protein (Brassica rapa) - STRING interaction network
"Bra002825" - AT1G55570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra002825AT1G55570 (E=9e-245) sks12 | sks12 (SKU5 Similar 12); copper ion binding / oxidoreductase (554 aa)    
Predicted Functional Partners:
Bra034195
AT4G03240 (E=6e-020) ATFH, FH | FH (FRATAXIN HOMOLOG) (155 aa)
         
  0.743
Bra000839
AT4G03240 (E=2e-051) ATFH, FH | FH (FRATAXIN HOMOLOG) (161 aa)
         
  0.743
Bra027641
AT1G63440 (E=0.0) HMA5 | HMA5 (HEAVY METAL ATPASE 5); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (1192 aa)
   
 
  0.715
Bra039194
AT4G37270 (E=0.0) HMA1, ATHMA1 | HMA1; ATPase/ cadmium-transporting ATPase/ calcium-transporting ATPase/ copper-exporting ATPase/ zinc transporting ATPase (774 aa)
   
 
  0.686
Bra038842
AT2G19110 (E=0.0) HMA4 | HMA4; cadmium ion transmembrane transporter/ cadmium-transporting ATPase/ zinc ion transmembrane transporter (1271 aa)
   
 
  0.686
Bra034566
AT4G33520 (E=2e-049) PAA1, HMA6 | PAA1 (P-TYPE ATP-ASE 1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter (212 aa)
   
 
  0.686
Bra027573
AT5G44790 (E=0.0) RAN1, HMA7 | RAN1 (RESPONSIVE-TO-ANTAGONIST 1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter (1002 aa)
   
 
  0.686
Bra025102
AT5G44790 (E=0.0) RAN1, HMA7 | RAN1 (RESPONSIVE-TO-ANTAGONIST 1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter (997 aa)
   
 
  0.686
Bra024449
AT2G19110 (E=0.0) HMA4 | HMA4; cadmium ion transmembrane transporter/ cadmium-transporting ATPase/ zinc ion transmembrane transporter (1190 aa)
   
 
  0.686
Bra024107
AT4G30110 (E=7e-199) HMA2 | HMA2; cadmium-transporting ATPase (883 aa)
   
 
  0.686
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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